graphlens: turn any repo into one typed graph — across Python, TypeScript, Go and Rust

Every code-intelligence tool I've ever used falls into one of two traps.

The first is the grep-and-read loop: you (or your AI agent) search for a name, open ten files, read around the matches, follow an import, search again. It works, but it's slow, it burns tokens, and it has no idea that the process_order you found in services.py is the same process_order that gets called from api.py — versus the unrelated one in tests/.

The second is the single-language silo: tools that understand Python beautifully but go blind the moment your TypeScript front end calls a Python FastAPI route. Real systems are polyglot. Your tooling usually isn't.

graphlens is an open-source (MIT) framework built to escape both traps. It parses a source project, normalizes its structure into a shared graph IR, and hands you that graph to do whatever you want with — dependency analysis, navigation, dead-code detection, or feeding an LLM agent precise answers instead of file dumps.

Repository → Language Adapter → GraphLens (IR) → Graph Backend

The key design decision: adapters are pure data producers. They never write to a database, never touch the filesystem after reading, never run a server. The graph is the only output. That makes the whole pipeline trivially testable, cacheable, and serializable.

30 seconds to your first graph

pip install "graphlens-cli[python]"
graphlens analyze ./my-project

graphlens · my-project
  nodes:      1240
  relations:  3981
  resolver:   ok

nodes by kind        relations by kind
  FUNCTION    410       CONTAINS    980
  METHOD      265       DECLARES    870
  CLASS        98       CALLS       640
  MODULE       54       REFERENCES  410

Or from Python:

from pathlib import Path
from graphlens import adapter_registry

adapter = adapter_registry.load("python")()
graph = adapter.analyze(Path("./my-project"))

print(len(graph.nodes), "nodes,", len(graph.relations), "relations")

fn = graph.nodes_by_name("process_order")[0]
print("called by:", [n.name for n in graph.callers(fn.id)])

What makes the edges real (and not name-matching guesses)

Most lightweight code-graph tools resolve references by name: see a call to save(), draw an edge to anything called save. That's fast and wrong — there are usually a dozen saves in a codebase.

graphlens splits the work in two:

1. Tree-sitter parses every file into a concrete syntax tree, giving exact structure and 1-based span positions. It records every use-site as an occurrence with a role (call / read / write / annotation / base).
2. A language-specific, type-aware resolver then answers definition_at(file, line, col) for each occurrence. The resolved definition becomes a real edge to the actual declaration node.

So a CALLS edge points at the real function, a HAS_TYPE edge at the real class, an INHERITS_FROM edge at the real base. This is the difference between "probably related" and "is related".

Honesty about partial failures

Type analysis can degrade — a toolchain is missing, a file doesn't type-check. Instead of silently producing a half-resolved graph, graphlens records the outcome:

from graphlens import RESOLVER_STATUS_KEY
graph.metadata[RESOLVER_STATUS_KEY]   # 'ok' | 'degraded' | 'unavailable'

In CI you flip on --strict and a non-ok status fails the build, so an agent or dashboard never consumes a graph that's quietly incomplete.

The graph model

Nodes (PROJECT, MODULE, FILE, CLASS, METHOD, FUNCTION, PARAMETER, VARIABLE, ATTRIBUTE, TYPE_ALIAS, IMPORT, DEPENDENCY, EXTERNAL_SYMBOL, BOUNDARY) are frozen dataclasses with an id, kind, qualified name, file path, span, and free-form metadata.

Relations are directed, typed edges:

Deterministic IDs

A node's ID is a SHA-256 hash of project::kind::qualified_name:

from graphlens import make_node_id
make_node_id("my-project", "my.module.func", "FUNCTION")
# → the same id every scan, on every machine

Because the ID depends only on identity, not file position, re-scanning yields the same IDs. That's what makes graph.diff(other) and incremental updates work — and what makes a graph cacheable in CI.

The feature single-language tools can't have: cross-language boundaries

This is my favorite part. Adapters emit language-agnostic BOUNDARY nodes for the interfaces a service exposes or consumes — HTTP routes, queue topics, gRPC methods, Temporal activities — with an EXPOSES edge (provider) or CONSUMES edge (consumer).

A boundary's ID is make_boundary_id(mechanism, key) — no project or language in it. HTTP paths are normalized so that /users/1, /users/{user_id} (FastAPI), <int:id> (Flask), and :id (Express) all collapse to GET /users/{}.

The payoff: a Python FastAPI route and a TypeScript fetch to the same endpoint produce the same boundary ID. Merge the two graphs, run graphlens-link, and you get COMMUNICATES_WITH edges spanning the language gap:

from graphlens import adapter_registry
from graphlens_link import link_graph

py = adapter_registry.load("python")().analyze(python_project)
ts = adapter_registry.load("typescript")().analyze(typescript_project)

merged = py
merged.merge(ts, allow_shared=True)   # identical BOUNDARY nodes coincide
result = link_graph(merged)           # adds consumer → provider edges

print(result.relations_added, "COMMUNICATES_WITH edges added")

Now you can answer "which front-end calls hit this endpoint?" — a question no single-language tool can even represent.

Five ways to use it

As a library — load an adapter, get a GraphLens, query it: callers, callees, references, neighborhoods, diffs, JSON round-trips, multi-language merges.

From the CLI — five subcommands cover the common workflows:

graphlens analyze ./repo --output graph.json   # index
graphlens query process_order -g graph.json --op callers
graphlens visualize ./repo                      # interactive vis.js HTML
graphlens neo4j ./repo --uri bolt://localhost:7687
graphlens mcp --graph graph.json                # serve to agents

In CI — --strict plus a Docker image (ghcr.io/neko1313/graphlens) with every adapter and toolchain pre-installed. Index on every push, publish the graph as an artifact, fail on a degraded graph.

To LLM agents over MCP — graphlens mcp exposes a saved graph as Model Context Protocol query tools (stats, find, callers, callees, references, neighbors, boundaries, communicates_with). Instead of dumping a codebase into the prompt, the agent asks precise questions and gets small structured answers — resolved edges, not best-effort text search.

As a Neo4j export — straight into a graph database with UNWIND … MERGE Cypher (no APOC required), then query it however you like.

Plugin architecture: the SQLAlchemy-dialect pattern

The core never imports an adapter. Each language is a separate package that registers itself via Python entry points:

[project.entry-points."graphlens.adapters"]
python = "graphlens_python:PythonAdapter"

Callers resolve adapters through a registry, by name string:

adapter_registry.available()        # ['python', 'typescript', ...]
adapter = adapter_registry.load("python")()

Adding a new language means writing one package against the LanguageAdapter contract — no changes to the core.

What graphlens is not

The scope is deliberately narrow, and the docs spell it out. graphlens produces a graph IR and stops there. It does not:

• persist state or own a database (backends are a separate consuming layer);
• watch the filesystem or re-index incrementally on its own (scans are pure functions; deterministic IDs enable incremental updates, but the caller drives them);
• compute embeddings, semantic search, or relevance ranking (the graph is structural and type-aware, not a vector index);
• provide a UI or an agent runtime (visualize emits static HTML, mcp exposes query tools — neither hosts a long-running service).

Those belong to tools built on top of graphlens. Keeping the core minimal is what keeps it composable.

Benchmarks

Throughput on real-world projects, refreshed on every release inside the published Docker image (single cold run, indicative):

Try it

pip install "graphlens-cli[python]"
graphlens analyze . --output graph.json
graphlens visualize .

• Repo: https://github.com/Neko1313/graphlens
• Docs: https://Neko1313.github.io/graphlens/
• Requirements: Python 3.13+. Python (ty) and TypeScript (Node) toolchains install on demand; Go and Rust adapters come via the Docker image.

If you've ever wanted a single, accurate, language-agnostic model of "how does this codebase actually fit together" — that's exactly what graphlens hands you. I'd love feedback, issues, and adapter contributions.